Stem-loop gra-MIR8654c

Accession

MI0027614

Description

Gossypium raimondii gra-MIR8654c precursor miRNA

Gene family

MIPF0001954; MIR8654

Sequence

aacuuauucuuuuucuucaucaaaguaguauucuuaaccucauuauccaaaauuugugucagagaugggggcaagaagacuuucacaacaacgaguucuuuaaucacaacaaccucugccgccccgagucgauuuuuagcuuuccucuaucguauuugucacuaccucuaaaaguuuucuugcccccacauuugacacauauuuugaauaaugagguuAAGGAUACUACUUUGAUGGAGAAAaagaauaagu
.(((((((((((((((((((((((((((((((((((((((((((((.((((((.(((((((((..((((((((((((((((((.........(((..................)))........(((((((((...............)))).)))))............))))))))))))))))))..))))))))).)))))).)))))))))))))))))))))))))))))))))))))))))))))

Structure

a                                             c      u         ga                  cacaacaacgaguucuuuaaucacaacaaccucugccgccc     -    uuuuag 
 acuuauucuuuuucuucaucaaaguaguauucuuaaccucauuau caaaau ugugucaga  ugggggcaagaagacuuu                                         cgagu cgau      c
 ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||                                         ||||| ||||      u
 ugaauaagaaAAAGAGGUAGUUUCAUCAUAGGAAuuggaguaaua guuuua acacaguuu  acccccguucuuuugaaa                                         guuua gcua      u
-                                             a      u         ac                  -----------------------------aucuccaucacu     u    ucuccu 

Annotation confidence Not enough data

Genome context

chr2: 53874733-53874984 [-]

Mature gra-miR8654c

• Accession: MIMAT0034019
• Description: Gossypium raimondii gra-miR8654c mature miRNA
• Sequence: 219 - AAGGAUACUACUUUGAUGGAGAAA - 242
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629