miRBase entry: gra-MIR8655

Stem-loop gra-MIR8655


Accession
MI0027615
Description
Gossypium raimondii gra-MIR8655 precursor miRNA


Sequence

ugucaucacaaauaugaucugaacauauuaaaaacacguugaucaaauuguaaauauauuuauacuuaugguguagaaagugcacauuuaucuuuaacauguaccuuguggagguuucuauuauuaaacaaccaugggguuguuuuuuucccaccagccaagacgaaggguuuaauaguuuuuagguuaugaaaucugacaauuugauccuaaauuaaauugaaguagaauugaaauauuuggggaaaaagucaaaccagucauacaaugaauaauuuaagaguguuuuuuuuaugugaaauuguuaauuuuuuaaagguuuuuauuauuuuauuauuaaauuuauuAUAUGUUCUGAUUAUAUCUGUucuuuuugau
.......(((.((((((((.((((((((.((((((((.((((....((((((......((((((((...))))))))......(((((((....))).))))(((((((((..((((........))))..)))))))))(((((((((((((..((((.........)))).........(((((((....)))))))(((((((((.....)))))))))..................))))))))))).)).........)))))).......))))..)))))))).......((((((.((((....)))).))))))........................)))))))).)))))))).)))..........

Structure
---ugucauc   a        u        --------------------------------------------------------u        -g    ---ucaa      -------------------------------------------------------------------------aauauauuuauacuuaugguguagaaagugcacauuuaucuuuaacaugu         ag    cua 
          aca auaugauc gaacauau                                                         aaaaacac  uuga       auugua                                                                                                                           accuugugg  guuu   u
          ||| |||||||| ||||||||                                                         ||||||||  ||||       ||||||                                                                                                                           |||||||||  ||||    
          UGU UAUAUUAG CUUGUAUA                                                         uuuuugug  aauu       uaacau                                                                                                                           ugggguacc  caaa   u
uaguuuuucu   C        U        uuauuuaaauuauuauuuuauuauuuuuggaaauuuuuuaauuguuaaaguguauuu        ag    uaauaag      acugaccaaacugaaaaagggguuuauaaaguuaagaugaaguuaaauuaaauccuaguuuaacagucuaaaguauuggauuuuugauaauuugggaagcagaaccgaccacccuuuuuuugu         aa    uua 


Annotation confidence Not enough data
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Genome context
chr4: 4325745-4326122 [+]

Database links

Mature gra-miR8655

Accession MIMAT0034020
Description Gossypium raimondii gra-miR8655 mature miRNA
Sequence 348 - AUAUGUUCUGAUUAUAUCUGU - 368
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629