miRBase entry: gra-MIR8656

Stem-loop gra-MIR8656


Accession
MI0027616
Description
Gossypium raimondii gra-MIR8656 precursor miRNA


Sequence

uugaaguugaUGGAAAAGUGGUAAUAAGGGGgauauuaacaacuagugagaaaauaguaugcaaggauuucaaaauuuuuguuaagcucacacaaaaucuaugcucaccgacacccuucaucucaucccagcuaccuggucuggucaauaaccaagaagcgaccacuuauuuggcaaacagaaugcuugaagccauugagaagaaaaauuucaaaguccgcuaucuucucacuaguuguugguauccccuuauuaccacuuuuccaucggcuucaau
(((((((((((((((((((((((((((((((.((((((((((((((((((((.(((((......((((((..((((((((.((.(((...............)))......................((((....))))..(((((..............)))))((((..((((...(((.....)))..)))).)))))).))))))))..))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))).

Structure
-                               g                    a     augcaa      ca        g  aagcucacacaaaaucuaugcucaccgacacccuucaucucaucccagcuaccuggucuggucaauaaccaagaagcgacca    uu    aaa   a 
 uugaaguugaUGGAAAAGUGGUAAUAAGGGG auauuaacaacuagugagaa auagu      ggauuu  aaauuuuu uu                                                                                  cuua  uggc   cag a
 ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||      ||||||  |||||||| ||                                                                                  ||||  ||||   ||| u
 aacuucggcuaccuuuucaccauuauucccc uaugguuguugaucacucuu uaucg      ccugaa  uuuaaaaa aa                                                                                  gagu  accg   guu g
u                               -                    c     ------      ac        g  ----------------------------------------------------------------------------------    -u    -aa   c 


Annotation confidence Not enough data
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Genome context
chr13: 51813682-51813958 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from gra-MIR8656
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gra-miR8656

Accession MIMAT0034021
Description Gossypium raimondii gra-miR8656 mature miRNA
Sequence 11 - UGGAAAAGUGGUAAUAAGGGG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629