Stem-loop gra-MIR8657a

Accession

MI0027617

Description

Gossypium raimondii gra-MIR8657a precursor miRNA

Gene family

MIPF0001902; MIR8657

Sequence

uagauugaauUGUAGUAAUUGUAGAAGUUCAGGGacuauucugcuauuuuucuuuuuucaugaguaucuacaggaucuugaucuaaaauauaaaauaauucauuuauuagcauauauauuucauuucuaauucauuuuacaauuaauacccuuuuauuuuuuaaauuuacacaauuacccuaaacuuuuacaauuuuuguaauuuaauccc
..(((((((((((((.(((((((((((((.((((...((((((......(((.........)))......))))))...((....(((((((...((((......)))).....)))))))....))(((((........)))))................................)))).))))))))))))).)))))))))))))..

Structure

ua             U             C    -----acuauucugcuauuuuucuuuuuucaugaguaucuacaggaucuu  ucua       --aaa    uc 
  gauugaauUGUAG AAUUGUAGAAGUU AGGG                                                  ga    aaauaua     uaau  a
  ||||||||||||| ||||||||||||| ||||                                                  ||    |||||||     ||||   
  cuaauuuaauguu uuaacauuuucaa uccc                                                  cu    uuuauau     auua  u
cc             u             a    auuaacacauuuaaauuuuuuauuuucccauaauuaacauuuuacuuaau  uuac       auacg    uu 

Annotation confidence Not enough data

Genome context

chr10: 53821358-53821568 [+]

Mature gra-miR8657a

• Accession: MIMAT0034022
• Description: Gossypium raimondii gra-miR8657a mature miRNA
• Sequence: 11 - UGUAGUAAUUGUAGAAGUUCAGGG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629