miRBase entry: gra-MIR8657d

Stem-loop gra-MIR8657d


Accession
MI0027619
Description
Gossypium raimondii gra-MIR8657d precursor miRNA
Gene family
MIPF0001902; MIR8657


Sequence

uggacugaauUGUAGUAAUUGUAGAAGUUCAGGGacuauucuguuauuuuuccuuuuucauaaguuucuacgggaucuugaucuaaaauauaaaauauucauucauuagcauauauuucacuucuaauucauuucacaauuauuacccuuuuauuuuuuaauuuacacaauuacccaaaacuuuuacaauuuuugcaauuuaauccu
.(((.((((((((((.(((((((((((((..(((...(((.(((((((((...((((...((((.(((....))).))))....))))...)))))).......(((((..............)))))....................................))).)))..)))..))))))))))))).)))))))))).))).

Structure
u   c          U             CA   acu   c   -------------------------------------------------------------------      ucc    -uca    u   u 
 gga ugaauUGUAG AAUUGUAGAAGUU  GGG   auu ugu                                                                   uauuuu   uuuu    uaag uuc a
 ||| |||||||||| |||||||||||||  |||   ||| |||                                                                   ||||||   ||||    |||| |||  
 ccu auuuaacguu uuaacauuuucaa  ccc   uaa aca                                                                   auaaaa   aaaa    guuc agg c
u   a          u             aa   -au   c   uuuaauuuuuuauuuucccauuauuaacacuuuacuuaaucuucacuuuauauacgauuacuuacuu      uau    ucua    u   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr9: 6849844-6850050 [-]

Database links

Mature gra-miR8657d

Accession MIMAT0034024
Description Gossypium raimondii gra-miR8657d mature miRNA
Sequence 11 - UGUAGUAAUUGUAGAAGUUCAGGG - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629