Stem-loop gra-MIR8657e

Accession

MI0027620

Description

Gossypium raimondii gra-MIR8657e precursor miRNA

Gene family

MIPF0001902; MIR8657

Sequence

uagauugaauUGUAGUAAUUGUAGAAGUUCAGGGacuauuucgcuauuuuucuuuuuucacgaguauauacgagaucaugaucuagaauauaaaauuauucauuuauuagcauauauuccauuuccaauucauuuuaaaauauaauacccuuuuauuuuuuaaauuuacacaauugcccuaaaguuuuacaauuuuuguaauuuaauccc
..(((((((((((((.((((((((((.((.((((...((((((.(((....(((.......)))...))))))))).........(((((......)))))................................(((((((.((((.......)))).)))))))............)))).)).)))))))))).)))))))))))))..

Structure

ua             U          G  C    -------------------------------------------------------------------------------------------------acu      c   uuuu   uu 
  gauugaauUGUAG AAUUGUAGAA UU AGGG                                                                                                    auuucg uau    cuu  u
  ||||||||||||| |||||||||| || ||||                                                                                                    |||||| |||    |||  u
  cuaauuuaauguu uuaacauuuu aa uccc                                                                                                    uagagc aua    gag  c
cc             u          g  a    guuaacacauuuaaauuuuuuauuuucccauaauauaaaauuuuacuuaaccuuuaccuuauauacgauuauuuacuuauuaaaauauaagaucuaguac      -   -uau   ca 

Annotation confidence Not enough data

Genome context

chr9: 30750731-30750940 [-]

Mature gra-miR8657e

• Accession: MIMAT0034025
• Description: Gossypium raimondii gra-miR8657e mature miRNA
• Sequence: 11 - UGUAGUAAUUGUAGAAGUUCAGGG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629