miRBase entry: gra-MIR8660

Stem-loop gra-MIR8660


Accession
MI0027625
Description
Gossypium raimondii gra-MIR8660 precursor miRNA


Sequence

aaaaucaauuuagccauucauuuaaacuuucuucuauuuuagcuauuaaacuuguauuauuugucaaaucaccuaaaaauagaugaaaaaguuaacauuguugaugugacauacaugugaauugcuacguggaugccaugucaacaauuaauuaguuuuuaaauuuuaaaaaaauucaaaauaauauauaaaaauuauuuuaaaaauuauaaaauguauuuuuaaauuuuaaaaauaauuaguuaauugcaaacgugguguauacugcgucaacaaaguuaacaaacauuaacuucuagcuauuuugggugauuugacaagcaaugcaaguuuaugagcuaaaagagACGAAAAAUUAAAUGGAGGGCUAaaauauauuu
........(((((((.(((((((((..((((.(((.((((((((..((((((((((((.(((((((((((((((((((.(((..(((...((((((.((((((((((......((((((......)))))).(((((((((...(((((((((((((((((((.((((((((.((.....(((((...(((((....)))))...))))).....)).)))))))).)))))))))...))))))))))...))))))))).....)))))))))).))))))..........)))...)))))))))))))))))))))).))))))))))))..)))))))).))).))))..))))))))).)))))))........

Structure
aaaaucaa       a         ac    u   a        au            a                   a   -au   -------aaa      a          gacauacaugugaauugcuacgugg         caa          ---         u        a  ucaaa     aua     a 
        uuuagcc uucauuuaa  uuuc ucu uuuuagcu  uaaacuuguauu uuugucaaaucaccuaaaa uag   gaa          guuaac uuguugaugu                         augccaugu   caauuaauua   guuuuuaaa uuuaaaaa au     auaau   uaaaa u
        ||||||| |||||||||  |||| ||| ||||||||  |||||||||||| ||||||||||||||||||| |||   |||          |||||| ||||||||||                         |||||||||   ||||||||||   ||||||||| |||||||| ||     |||||   |||||  
        aaAUCGG AGGUAAAUU  AAAG Aga aaaaucga  auuugaacguaa gaacaguuuaguggguuuu auc   cuu          caauug aacaacugcg                         uguggugca   guuaauugau   uaaaaauuu aaauuuuu ug     uauua   auuuu u
uuuauaua       G         AA    C   g        gu            c                   -   gau   caauuacaaa      a          --------------------ucaua         aac          uaa         u        a  uaaaa     aaa     a 


Annotation confidence Not enough data
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Genome context
chr4: 34280607-34280986 [-]

Database links

Mature gra-miR8660

Accession MIMAT0034030
Description Gossypium raimondii gra-miR8660 mature miRNA
Sequence 348 - ACGAAAAAUUAAAUGGAGGGCUA - 370
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629