Stem-loop gra-MIR8663b

Accession

MI0027628

Description

Gossypium raimondii gra-MIR8663b precursor miRNA

Gene family

MIPF0001880; MIR8663

Sequence

aaucacuuuuUGAGGCAUGAACUUGGCAAUUUUccccacauuugggccugaaauuuuuuuuguccaagugaggcccuaaacuaggcaauuguuuucauaugggggcuggaacuuuuucuuugguccaaguuaguccuugaaaugugggaacaaacuuggacaaauaaaagguucaagccccaaugugggaacaguugucaaauucagggccuaacuugaaccaaaaaaaaaaauccaggccccaaugugggaaaaguugcuaaguucaggccccaaauagugauuu
(((((((.((((.(((.((((((((((((((((.((((((((.(((((((...(((((((((..(((((.(((((((......(((((((((((((((((.((((((.(((((((((.((((.((((((((.(((((........))).)).)))))))))))).))))))))).)))))).)))))))))))))))))......))))))).)))))...))))))))).....))))))).)))))))).)))))))))))))))).))).)))).))))))).

Structure

-       u    A   A                c        u       --aaa         -uc     g       aaacua                 g      g         c    g        a  -   uga 
 aaucacu uuUG GGC UGAACUUGGCAAUUUU cccacauu gggccug     uuuuuuuug   caagu aggcccu      ggcaauuguuuucauau ggggcu gaacuuuuu uuug uccaaguu gu ccu   a
 ||||||| |||| ||| |||||||||||||||| |||||||| |||||||     |||||||||   ||||| |||||||      ||||||||||||||||| |||||| ||||||||| |||| |||||||| || |||    
 uuaguga aaac ccg acuugaaucguugaaa ggguguaa cccggac     aaaaaaaac   guuca uccggga      cuguugacaagggugua ccccga cuuggaaaa aaac agguucaa ca ggg   a
u       u    c   g                a        c       cuaaa         caa     a       cuuaaa                 a      a         u    -        a  a   ugu 

Annotation confidence Not enough data

Genome context

chr8: 33878980-33879265 [-]

Mature gra-miR8663b

• Accession: MIMAT0034033
• Description: Gossypium raimondii gra-miR8663b mature miRNA
• Sequence: 11 - UGAGGCAUGAACUUGGCAAUUUU - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629