Stem-loop gra-MIR8665

Accession

MI0027631

Description

Gossypium raimondii gra-MIR8665 precursor miRNA

Sequence

caauugauuaauuuuugguguuuaugagauuaaaugaugauuugguaaucuuuauuguuaauuaggauuauuuuguacaggaauuuugguuaguuuugaaccuagggccuaauuugaaauuauguaaaaauuuagcauauuaauugugaagaauucgaaugguaaaggcugcuuugggguguuauugaauuuaguuggaaguauuagagguuaaaagugaaaauuuaaaauauuuugguguuaaggacuaaauugaauaaaguguaaaauuguaaaaaaugaaauuuaaggggcauaugcauagaaauaaacuuaauaauguauuugaauugaauaaauugaauUUAAUUAUUAUAUAGAUCAAGGAUugaacgguac
..((((.((((((((((((.(.(((((((((((((.((.((((((...(((((((.((((((..(....(((((.((((..(((((((((((((((((....))))).)))).)))))))).)))))))))....)..)))))).)))))))..)))))).))....((...((((.(.(.(((((.(((((((((.....((((((((.....((((....))))......)))))))).....))))))))).)))))).).))))...))..........((((((....((.((((((................)))))).))..)))))).......)))))))).))))).).)))))))))))).))))..

Structure

ca    a            g u     -        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------g  g      uaa       u      ua gauu     g    gg        -    -     a 
  auug uuaauuuuuggu u uauga gauuaaau                                                                                                                                                                                   au auuugg   ucuuuau guuaau  g    auuuu uaca  aauuuugg uuag uuuug a
  |||| |||||||||||| | ||||| ||||||||                                                                                                                                                                                   || ||||||   ||||||| ||||||  |    ||||| ||||  |||||||| |||| |||||  
  uggc aguUAGGAACUA A AUAUU UUAAUUua                                                                                                                                                                                   ug uaagcu   agaagug uaauua  c    uaaaa augu  uuaaaguu aauc gggau c
ca    a            G U     A        aguuaaauaaguuaaguuuauguaauaauucaaauaaagauacguauacggggaauuuaaaguaaaaaauguuaaaaugugaaauaaguuaaaucaggaauugugguuuuauaaaauuuaaaagugaaaauuggagauuaugaagguugauuuaaguuauugugggguuucgucggaaa  g      -ua       u      ua gauu     -    -a        u    c     c 

Annotation confidence Not enough data

Genome context

chr2: 22248718-22249095 [-]

Mature gra-miR8665

• Accession: MIMAT0034036
• Description: Gossypium raimondii gra-miR8665 mature miRNA
• Sequence: 345 - UUAAUUAUUAUAUAGAUCAAGGAU - 368
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629