miRBase entry: gra-MIR8669

Stem-loop gra-MIR8669


Accession
MI0027635
Description
Gossypium raimondii gra-MIR8669 precursor miRNA


Sequence

cucggauuauauugagguuuuguuuccgccuuuauugagagccaacaugcugugagcaauuugauucacagagagagaacaccuugaagaauugggcuauacuuggacgccaaugggcgagacacucauguccccuuaguaaguggccuuguguccacguauggcucgauuccucaaggugcucuccuuauauuagugaaacugcucauggcacauugacucucgauAAAGACGAAAGACAAAAUCUCAAUacaacccgaa
.((((.((.((((((((((((((((.((.((((((((((((.(((..(((((((((((.(((.(((....(((.((((.((((((((.((((((((((((((.(((((((....((((.(((((....))))...........).)))).))))))).)))))))))))))).)))))))).))))))).....))).))).)))))))))))..))).)))))))))))).))..)))))))))))))))).)).)))).

Structure
c    a  a                -c  c            c   ca           a   g   -caca   a    a        a              u       caau    g -----------    c 
 ucgg uu uauugagguuuuguuu  cg cuuuauugagag caa  ugcugugagca uuu auu     gag gaga caccuuga gaauugggcuauac uggacgc    gggc a           gaca u
 |||| || ||||||||||||||||  || |||||||||||| |||  ||||||||||| ||| |||     ||| |||| |||||||| |||||||||||||| |||||||    |||| |           ||||  
 agcc aa aUAACUCUAAAACAGA  GC GAAAuagcucuc guu  acgguacucgu aaa uga     uuc cucu guggaacu cuuagcucgguaug accugug    uccg u           cugu c
a    c  c                AA  A            a   ac           c   g   uuaua   -    c        c              c       ---u    g gaaugauuccc    a 


Annotation confidence Not enough data
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Genome context
chr12: 7740459-7740719 [-]

Database links

Mature gra-miR8669

Accession MIMAT0034040
Description Gossypium raimondii gra-miR8669 mature miRNA
Sequence 228 - AAAGACGAAAGACAAAAUCUCAAU - 251
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629