Stem-loop gra-MIR1446

Accession

MI0027637

Description

Gossypium raimondii gra-MIR1446 precursor miRNA

Gene family

MIPF0000459; MIR1446

Sequence

caagggacccaacaaucacuAACUCUCUCCCUCAAAGGCUAuucugguauauggauaugcaaauccuuguuaguuguuacuuggaguagccguugaggugagagcguuauagaauguuggcucucugucu
..(((((.((((((.((..((((.(((((((((((.(((((((((((((....(((..((((....))))..)))..))).)))))))))).)))))).))))).))))..)).)))))).)))))....

Structure

--ca     c      a  ac    U     -      A          -   uaug   au    a 
    aggga ccaaca uc  uAAC CUCUC CCUCAA GGCUAuucug gua    gau  gcaa u
    ||||| |||||| ||  |||| ||||| |||||| |||||||||| |||    |||  ||||  
    ucucu gguugu ag  auug gagag ggaguu ccgaugaggu cau    uug  uguu c
ucug     c      a  au    c     u      g          u   --ug   au    c 

Annotation confidence Not enough data

Genome context

chr7: 3175703-3175832 [+]

Mature gra-miR1446

• Accession: MIMAT0034042
• Description: Gossypium raimondii gra-miR1446 mature miRNA
• Sequence: 21 - AACUCUCUCCCUCAAAGGCUA - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629