Stem-loop gra-MIR8676

Accession

MI0027642

Description

Gossypium raimondii gra-MIR8676 precursor miRNA

Sequence

uguguuuuuuaguuaaauuugaccauuaacuuuucaaaaagaguuaaaucauuuuuuuaaauggaaauauugacuaaaacauuaauuuuuaacgaugcuaacgugguaguccacguguacuucaugcugauaugacacuauuugucaugcaaugcuaacaaauaauuuaaaaauuguaaauauauucaauaaaauaaaaaauccaaaauccaaaaaauuauaaaaaguucauaaaaauacacaaaaguagcaugaaguccaugagaauugucaugugagcuaccauguuaaaaauuuaauguuuuaguuaguauuucuauuaaaaaaauuucaaaucuuuuuaAAGGUUGAUGGUUAAAUUUGACUcuuuuuaaaa
..........((((((((((((((((((((((((.(((((((........((((((((((.(((((((((((((((((((((((((((((((((..(((.((((((((((.(.((((.(((((((((((..((((((.....))))))(((((...................)))))......................................................................))))))))))).)))).).)))))))))).))).....))))))))).))))))))))))))))))))))))))))))))))......)))))))))))))))))))))))))))))))..........

Structure

uguguuuuuu                        c       guuaaauc          a                        -         ---au   a          c a    u           -------------------------------------------------------------------------------------------------au      c 
          aguuaaauuugaccauuaacuuuu aaaaaga        auuuuuuuaa uggaaauauugacuaaaacauuaa uuuuuaacg     gcu acgugguagu c cgug acuucaugcug                                                                                                   augaca u
          |||||||||||||||||||||||| |||||||        |||||||||| |||||||||||||||||||||||| |||||||||     ||| |||||||||| | |||| |||||||||||                                                                                                   |||||| a
          UCAGUUUAAAUUGGUAGUUGGAAa uuuuucu        uaaaaaaauu aucuuuaugauugauuuuguaauu aaaaauugu     cga uguacuguua g guac ugaaguacgau                                                                                                   uacugu u
aaaauuuuuc                        -       --aaacuu          -                        u         accau   g          a a    c           gaaaacacauaaaaauacuugaaaaauauuaaaaaaccuaaaaccuaaaaaauaaaauaacuuauauaaauguuaaaaauuuaauaaacaaucguaacg      u 

Annotation confidence Not enough data

Genome context

chr13: 48939991-48940366 [+]

Mature gra-miR8676

• Accession: MIMAT0034047
• Description: Gossypium raimondii gra-miR8676 mature miRNA
• Sequence: 344 - AAGGUUGAUGGUUAAAUUUGACU - 366
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629