Stem-loop gra-MIR8683

Accession

MI0027649

Description

Gossypium raimondii gra-MIR8683 precursor miRNA

Sequence

uaaacacaaaauucucucaauguauuaugaguucuaaucuaauugguguauuuucuaagguuauaaaagagccuauuuauaggcuaaauucauaugucaaauaauaauaaaauuuuagccucuaaauaggcucuuuuacaacauuagaaaauacacucauuagauuAGAACUCAUAACACAUUUAGAUAAuuuuguguuu
.((((((((((((.(((.(((((.(((((((((((((((((((.((((((((((((((.(((.((((((((((((((((.((((((((....(((...........)))....)))))))).)))))))))))))))).))).)))))))))))))).))))))))))))))))))).))))).))).))))))))))))

Structure

u            c   c     a                   u              g   a                u        uuca   guca 
 aaacacaaaauu ucu aaugu uuaugaguucuaaucuaau gguguauuuucuaa guu uaaaagagccuauuua aggcuaaa    uau    a
 |||||||||||| ||| ||||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||    |||    a
 uuuguguuuuAA AGA UUACA AAUACUCAAGAuuagauua ucacauaaaagauu caa auuuucucggauaaau uccgauuu    aua    u
-            U   U     C                   c              a   c                c        uaaa   auaa 

Annotation confidence Not enough data

Genome context

chr1: 45746048-45746247 [-]

Mature gra-miR8683

• Accession: MIMAT0034054
• Description: Gossypium raimondii gra-miR8683 mature miRNA
• Sequence: 167 - AGAACUCAUAACACAUUUAGAUAA - 190
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629