Stem-loop gra-MIR8690

Accession

MI0027658

Description

Gossypium raimondii gra-MIR8690 precursor miRNA

Sequence

uuaaauuaucguuuuauuacgaaguggucauucaacuauuaagcugcguuagcucccuaacggcagucuuacguaguaguccaaauagguuuuaacggaauuuaacaguAGAGUGACUACUUCGUAACAAAACaauaauauac
....(((((.(((((.(((((((((((((((((.(((.(((((((((((.((((.((....)).)).)).)))))))..(((..............)))..)))).))).))))))))))))))))).))))).)))))....

Structure

uuaa     c     a                 a   a    ------------------------       u  -  c  u 
    auuau guuuu uuacgaaguggucauuc acu uuaa                        gcugcgu ag cu cc a
    ||||| ||||| ||||||||||||||||| ||| ||||                        ||||||| || || ||  
    uaaua CAAAA AAUGCUUCAUCAGUGAG uga aauu                        ugaugca uc ga gg a
caua     a     C                 A   c    uaaggcaauuuuggauaaaccuga       u  u  c  c 

Annotation confidence Not enough data

Genome context

chr5: 62497766-62497908 [-]

Mature gra-miR8690

• Accession: MIMAT0034063
• Description: Gossypium raimondii gra-miR8690 mature miRNA
• Sequence: 110 - AGAGUGACUACUUCGUAACAAAAC - 133
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629