miRBase entry: gra-MIR8696

Stem-loop gra-MIR8696


Accession
MI0027672
Description
Gossypium raimondii gra-MIR8696 precursor miRNA


Sequence

gccuaaacuaggcaacuguucccacauugggacuugaaccuuuuuuuugucuaaauuaguccuuaaacuugacaauuguuuccaugauggggccuaacuuggacuauaaaaaaauuuAGGCUCUAAUGUGGGAACGACUGCcaaguuuagg
.((((((((.((((..(((((((((((((((.((((((..(((((...((((((.((((((((.......(((....)))........)))).)))).))))))...)))))..)))))).)))))))))))))))..)))).))))))))

Structure
g        a    ac               a      cc     uuu      a    -    -uaaacuu   a 
 ccuaaacu ggca  uguucccacauuggg cuugaa  uuuuu   gucuaa uuag uccu        gac a
 |||||||| ||||  ||||||||||||||| ||||||  |||||   |||||| |||| ||||        |||  
 ggauuuga cCGU  GCAAGGGUGUAAUCU GGAuuu  aaaaa   cagguu aauc gggg        uug u
-        a    CA               C      aa     uau      c    c    uaguaccu   u 


Annotation confidence Not enough data
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Genome context
chr7: 60022594-60022744 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gra-MIR8696
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gra-miR8696

Accession MIMAT0034077
Description Gossypium raimondii gra-miR8696 mature miRNA
Sequence 118 - AGGCUCUAAUGUGGGAACGACUGC - 141
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629