Stem-loop gra-MIR8697

Accession

MI0027673

Description

Gossypium raimondii gra-MIR8697 precursor miRNA

Sequence

cauuuuaugcAGGGAAAUUGAUUCAAGUGAGCAUugcuuuaaaaacauuguuuuacauuuguuuaguauauaaauugaucauuuuuuuuucugguuuauuuaucuuucuuucucauaaaacuuaauaucuauguauguauuuuauuguagcauuugguguuauaaguauguaugaugagagccuaggcugaucaaugccacugcgaaaaaacccugcaugcauuugagcaacgugaaagaaagacaaaauaaacccaaaaaaaauaagcaauuuauauacuaaacaaauguaaaacaauguuuuuaaagcacaucaaauaugcucacuugaaucaguuucccugcaaaagaugu
((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((...(((((((((...(((((((((.((((((((((........(((((.....(((((((((((((.((((((....((((((............((((.((........)).)))))))))))))))).))))...))))))))))))))......))))))))))..))))))))).)))))))))...)))))))))))))))))))))))))))))))))))))))))))........))))))))))))))))))))))))))).)))))).

Structure

-      a                           --------                                           auc         ucu         -a          ucauaaaa     uaucu         ---    a      cauu      uauaaguaugua    g  agc 
 cauuuu ugcAGGGAAAUUGAUUCAAGUGAGCAU        ugcuuuaaaaacauuguuuuacauuuguuuaguauauaaauug   auuuuuuuu   gguuuauuu  ucuuucuuuc        cuuaa     auguaugua   uuuu uuguag    uggugu            ugau ag   c
 |||||| |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||   |||||||||   |||||||||  ||||||||||        |||||     |||||||||   |||| ||||||    ||||||            |||| ||    
 guagaa acgucccuuugacuaaguucacucgua        acgaaauuuuuguaacaaaauguaaacaaaucauauauuuaac   uaaaaaaaa   ccaaauaaa  agaaagaaag        gaguu     uacguacgu   aaaa agcguc    accgua            acua uc   u
u      a                           uaaacuac                                           gaa         --c         ac          --ugcaac     -----         ccc    a      ----      ------------    g  gga 

Annotation confidence Not enough data

Genome context

chr3: 39386073-39386426 [+]

Mature gra-miR8697

• Accession: MIMAT0034078
• Description: Gossypium raimondii gra-miR8697 mature miRNA
• Sequence: 11 - AGGGAAAUUGAUUCAAGUGAGCAU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629