Stem-loop gra-MIR8698

Accession

MI0027674

Description

Gossypium raimondii gra-MIR8698 precursor miRNA

Sequence

cguuaaaguuaacuguuaaaguugauugccucuaauuuuuuuuaguuaaagucaucaugugucauaaccucggagugauauguggcaaaaaaauuauaaaaacuauuaaaaaucauaaaaauuauuaaaauuuaguaaaaaauauaaaaaauuuaaaauuuauuaaaaauuagaaaaaaaauguaaaaacaguaaaaaaauuAGGGACAAUUAACUUUAACGGUCAaauguuaaag
...........(((((((((((((((((.(((((((((((((..(((.......(((((((((((..(....).))))))))))).............................................(((((((((...................)))))))))....................)))...))))))))))))).)))))))))))))))))............

Structure

-cguuaaaguua                 c             -ua   -----------------------------------------------------------------------------------------------aaaguca           aa c 
            acuguuaaaguugauug cucuaauuuuuuu   guu                                                                                                      ucaugugucau  c u
            ||||||||||||||||| |||||||||||||   |||                                                                                                      |||||||||||  |  
            UGGCAAUUUCAAUUAAC GGGAuuaaaaaaa   caa                                                                                                      gguguauagug  g c
gaaauuguaaAC                 A             uga   aaauguaaaaaaaagauuaaaaauuauuuaaaauuuaaaaaauauaaaaaaugauuuaaaauuauuaaaaauacuaaaaauuaucaaaaauauuaaaaaaac           -a g 

Annotation confidence Not enough data

Genome context

chr6: 32137935-32138170 [+]

Mature gra-miR8698

• Accession: MIMAT0034079
• Description: Gossypium raimondii gra-miR8698 mature miRNA
• Sequence: 203 - AGGGACAAUUAACUUUAACGGUCA - 226
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629