Stem-loop gra-MIR530b

Accession

MI0027682

Description

Gossypium raimondii gra-MIR530b precursor miRNA

Gene family

MIPF0000521; MIR530

Sequence

gcagccuuuaucugcauuugcaccugcaccuucuuguuuuuaauuaucugcuucugcuucagaaaccaaauguguugaugaaaauagaauaggaccgaaacagaaaauaauaauaAGGUGCAGGUGCAGGCGCAGCugaaugccau
...((.((((.((((.((((((((((((((((.((((((((.....(((..(((((.((((..((((....).)))..))))..)))))..)))........))))))))....)))))))))))))))).)))).)))).))...

Structure

gca  c    u    a                ---c        ---aauua   gc     -c    ga   - a 
   gc uuua cugc uuugcaccugcaccuu    uuguuuuu        ucu  uucug  uuca  aac c a
   || |||| |||| ||||||||||||||||    ||||||||        |||  |||||  ||||  ||| |  
   cg aagu GACG GGACGUGGACGUGGAa    aauaaaag        agg  aagau  aagu  uug g a
uac  u    C    C                uaau        acaaagcc   au     aa    ag   u u 

Annotation confidence Not enough data

Genome context

chr9: 8086491-8086636 [+]

Mature gra-miR530b

• Accession: MIMAT0034087
• Description: Gossypium raimondii gra-miR530b mature miRNA
• Sequence: 116 - AGGUGCAGGUGCAGGCGCAGC - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629