Stem-loop gra-MIR8708

Accession

MI0027690

Description

Gossypium raimondii gra-MIR8708 precursor miRNA

Sequence

gAGGAGGAGUUAUGGAUAGUUUUAggcaucguguaaaaaaauauaauaauuaggauaaaauuauaaaauuaaauagauuuaaguuaaauuauuaauuuuaaaaauaucaaaauaauuacaaaaccauucuauuuuuuuuauuugaacgucuaguucaauugugaaaauaucugaaaguuucuaaguugauacaaugcuuagaacuauccauaacccuuucua
.((((((.(((((((((((((((((((((.((((.........((((.(((..((((...((.(((((((((...((((((...)))))).))))))))).)).))))..))).))))..((((..(((.....(((((((((((((.....))))))..))))))).....))).))))........)))).))))))))))))))))))))).)))))).

Structure

g      A                     c    -------------------------------------------------------------aaaaaaaua    a   ag    aaa  a         aua      a 
 AGGAGG GUUAUGGAUAGUUUUAggcau gugu                                                                      uaau auu  gaua   uu uaaaauuaa   gauuua  
 |||||| ||||||||||||||||||||| ||||                                                                      |||| |||  ||||   || |||||||||   |||||| g
 ucuuuc caauaccuaucaagauucgua caua                                                                      auua uaa  cuau   aa auuuuaauu   uuaaau  
a      c                     a    guugaaucuuugaaagucuauaaaaguguuaacuugaucugcaaguuuauuuuuuuuaucuuaccaaaac    a   aa    --a  a         --a      u 

Annotation confidence Not enough data

Genome context

chr7: 51635052-51635273 [-]

Mature gra-miR8708

• Accession: MIMAT0034095
• Description: Gossypium raimondii gra-miR8708 mature miRNA
• Sequence: 2 - AGGAGGAGUUAUGGAUAGUUUUA - 24
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629