miRBase entry: gra-MIR477

Stem-loop gra-MIR477


Accession
MI0027714
Description
Gossypium raimondii gra-MIR477 precursor miRNA

Literature search
1 open access papers mention gra-MIR477
(1 sentences)

Sequence

uguacaugcaacccuuuuuuacucucuuccaaaggcuucaagcugcuauaugaaaacaaucauaguuCGAAGUCUUGGAAGAGAGUAAagaaaaguugucaugauuuu
....((((((((..((((((((((((((((((.((((((.((((.....((((......)))))))).))))))))))))))))))))))))..)))).)))).....

Structure
-ugua    -    cc                  a      a    gcuau    aa 
     caug caac  uuuuuuacucucuuccaa ggcuuc agcu     auga  a
     |||| ||||  |||||||||||||||||| |||||| ||||     ||||   
     guac guug  aagaAAUGAGAGAAGGUU CUGAAG uuga     uacu  c
uuuua    u    aa                  -      C    -----    aa 


Annotation confidence Not enough data
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Genome context
chr4: 43300210-43300317 [-]

Database links

Mature gra-miR477

Accession MIMAT0034119
Description Gossypium raimondii gra-miR477 mature miRNA
Sequence 68 - CGAAGUCUUGGAAGAGAGUAA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629