Stem-loop gra-MIR8727

Accession

MI0027718

Description

Gossypium raimondii gra-MIR8727 precursor miRNA

Sequence

ucauccaccgagcagucaauCGGACUCUCAAACAGUGGAGGUAuugugccuaaggugucuaugcucaguuuagccgaagguuuuugucuuucaacuccgaggagauuccaacggguucacggaguuuagggacugucuaaucaccgaggaaauguuuagcaauuggccuuaguggguuuugaacccaugcccuuaaaugacauuaguggguaagaacaucccaggcauaauaccuccauuguuugagggucugaucguagacacuucaaagacuu
.........(((..(((.(((((((((((((((((((((((((((((((((..(((((((.((((((.(....((...(((..((((((((.(((((((..((.((((....)))))).))))))).)))))).....))..)))..)).((((((........(((....(((((((...)))))))))).......))))))).)))))))).)))))..)))))))))))))))))))))))))))))))))....)))..)))........

Structure

ucauccacc   ca   ---a                                 aa     -  a      g ---------------------------------------------------uuag  gaa   uu  -----      c       ag  g    c 
         gag  guc    auCGGACUCUCAAACAGUGGAGGUAuugugccu  ggugu cu ugcuca u                                                       cc   ggu  uu     gucuuu aacuccg  ga auuc a
         |||  |||    |||||||||||||||||||||||||||||||||  ||||| || |||||| |                                                       ||   |||  ||     |||||| |||||||  || ||||  
         cuu  cag    uagucugggaguuuguuaccuccauaauacgga  cuaca ga augggu a                                                       gg   cca  aa     caggga uugaggc  cu uggg a
-uucagaaa   ca   augc                                 cc     a  -      g uuacaguaaauucccguacccaaguuuugggugauuccgguuaacgauuuguaaa  -ag   cu  ucugu      u       -a  -    c 

Annotation confidence Not enough data

Genome context

chr1: 675120-675394 [-]

Mature gra-miR8727

• Accession: MIMAT0034123
• Description: Gossypium raimondii gra-miR8727 mature miRNA
• Sequence: 21 - CGGACUCUCAAACAGUGGAGGUA - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629