Stem-loop gra-MIR5207

Accession

MI0027730

Description

Gossypium raimondii gra-MIR5207 precursor miRNA

Sequence

gaauagaaacCUUAAGGUGGGUUUGGAUGGGCGAuugggugcggugcggugcguuuaguuuacuuuuugucucacgcuacaguaucgcuacaguaucuaaucucaccgccaccgcuguuuuuacacuaaccccaaguaaacguaucgcccauccaagcucacccuaagucagaaguua
..........((((.((((((((((((((((((((((((.(((((((((((.(.((((..((((....((...((......))...))...)))).)))).).))))).))))))(((....))).....)))).........)))))))))))))))))))).))))..........

Structure

gaauagaaac    A                    ---------    --------------u      -     c u    uu    uuuu  cuc  gc 
          CUUA GGUGGGUUUGGAUGGGCGAu         uggg               gcggug cggug g uuag  uacu    gu   ac  u
          |||| ||||||||||||||||||||         ||||               |||||| ||||| | ||||  ||||    ||   ||   
          gaau ccacucgaaccuacccgcua         accc               cgccac gccac c aauc  auga    cg   ug  a
auugaagacu    c                    ugcaaauga    caaucacauuuuugu      c     u u    -u    -cau  cua  ac 

Annotation confidence Not enough data

Genome context

chr2: 55348108-55348285 [+]

Mature gra-miR5207

• Accession: MIMAT0034135
• Description: Gossypium raimondii gra-miR5207 mature miRNA
• Sequence: 11 - CUUAAGGUGGGUUUGGAUGGGCGA - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629