Stem-loop gra-MIR7484o

Accession

MI0027735

Description

Gossypium raimondii gra-MIR7484o precursor miRNA

Gene family

MIPF0001667; MIR7484

Sequence

aaaugggcaaauuagucccuuaaugcuagaucaaagagcaaacuaguucuuuaguuaaaaauuccauccaacgugucacucuacgacaguuuuaaaccgugcaaauggaugacaguuuuaauagaaagaacuaauuugcucuuuGAUUUAACGUAUAGGGACUAAuuugcuuauu
.(((((((((((((((((((..(((.((((((((((((((((.(((((((((.(((((((....(((((((((((((.......)))).........))).....))))))....)))))))..))))))))).)))))))))))))))).)))..)))))))))))))))))))

Structure

a                   ua   c                c         -a       auuc      -----   ---------    ac 
 aaugggcaaauuagucccu  aug uagaucaaagagcaaa uaguucuuu  guuaaaa    caucca     acg         uguc  u
 |||||||||||||||||||  ||| |||||||||||||||| |||||||||  |||||||    ||||||     |||         ||||  c
 uuauucguuuAAUCAGGGA  UGC AUUUAGuuucucguuu aucaagaaa  uaauuuu    guaggu     ugc         acag  u
-                   UA   A                a         ga       gaca      aaacg   caaauuuug    ca 

Annotation confidence Not enough data

Genome context

chr10: 2353426-2353600 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR7484o

Mature gra-miR7484o

• Accession: MIMAT0034140
• Description: Gossypium raimondii gra-miR7484o mature miRNA
• Sequence: 145 - GAUUUAACGUAUAGGGACUAA - 165
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629