miRBase entry: gra-MIR172b

Stem-loop gra-MIR172b


Accession
MI0027736
Description
Gossypium raimondii gra-MIR172b precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
2 open access papers mention gra-MIR172b
(10 sentences)

Sequence

guuugcugcuGCAGCAUUAUCAAGAUUCACAagaggcguuuuagggucuuuuuugauugauugaucaaucaauaagcccuuuuaugauugagaaucuugaugaugcugcaguggcaaua
..((((((((((((((((((((((((((.(((....(((...((((.(((..((((((((....)))))))).)))))))...))).))).))))))))))))))))))))))))))..

Structure
gu                          A   gagg   uuu    u   uu        u 
  uugcugcuGCAGCAUUAUCAAGAUUC CAa    cgu   aggg cuu  uugauuga u
  |||||||||||||||||||||||||| |||    |||   |||| |||  ||||||||  
  aacggugacgucguaguaguucuaag guu    gua   uccc gaa  aacuaacu g
au                          a   ---a   uuu    -   -u        a 


Annotation confidence Not enough data
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Genome context
chr11: 59826564-59826682 [+]

Database links

Mature gra-miR172b

Accession MIMAT0034141
Description Gossypium raimondii gra-miR172b mature miRNA
Sequence 11 - GCAGCAUUAUCAAGAUUCACA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629