miRBase entry: gra-MIR8771a

Stem-loop gra-MIR8771a


Accession
MI0027738
Description
Gossypium raimondii gra-MIR8771a precursor miRNA
Gene family
MIPF0001892; MIR8771


Sequence

auugagcuuuguuaccucuccaacggcaauccgaauggguuuuaaaugccaacugggauaagaauaauuuuuucaaucaaaauggaaaagaaaacuaaaagaaaggagacaaaugauuuuuuuuuccaguuuaagguguaauuaauuuaaaauuuuuaauuaauuaaaauuauuuaauuaaaaaccuguucuagucucaaucagacauucaaguugguauuuaaaacccauuuggacuguuguauaGGAUUGUCGUUAGGGAGGUAAcagagcuuaa
.(((((((((((((((((((.((((((((((((((((((((((((((((((((((((((.((((((..(((((((.......)))))))..(((((..(((((((((.........)))))))))..)))))....................(((((((((((.((....)).)))))))))))..)))))).))))).............))))))))))))))))))))))..((....))...))))))))))).)))))))))))))))))))

Structure
a                   c           -------------                      -------------     a      -----------------------------auuuuuucaaucaaaauggaaaaga     aa         gac 
 uugagcuuuguuaccucuc aacggcaaucc             gaauggguuuuaaaugccaacu             gggau agaaua                                                      aaacu  aagaaagga   a
 ||||||||||||||||||| |||||||||||             ||||||||||||||||||||||             ||||| ||||||                                                      |||||  |||||||||   a
 aauucgagacAAUGGAGGG UUGCUGUUAGG             uuuacccaaaauuuaugguuga             cucug ucuugu                                                      uuuga  uuuuuuuuu   a
-                   A           auauguugucagg                      acuuacagacuaa     a      ccaaaaauuaauuuauuaaaauuaauuaauuuuuaaaauuuaauuaauguggaa     cc         agu 


Annotation confidence Not enough data
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Genome context
chr13: 5061901-5062177 [-]

Database links

Mature gra-miR8771a

Accession MIMAT0034143
Description Gossypium raimondii gra-miR8771a mature miRNA
Sequence 247 - GGAUUGUCGUUAGGGAGGUAA - 267
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629