Stem-loop gra-MIR8771b

Accession

MI0027739

Description

Gossypium raimondii gra-MIR8771b precursor miRNA

Gene family

MIPF0001892; MIR8771

Sequence

guuaaacuccauuaccucccuaacgguaauccuaugugacaauucaaaugaguuuuaaaugccaacuuagauguccaauuaggacuagaauagguuuuuaauuaaauaaauuuaauuaauuaaaaguuuaaaacuaauuacaccuugaauugaaaaagaaaaaccauuagucucauuuuucuuuuaguuuucuuuuccauuuugacugaaaaaaauauucucauuaaaguugacauuuaaaaccuauuuggacuGGAUUGUCGUUAGGGAGGUAAuugaguuuaa
.((((((((.((((((((((((((((((((((..........((((((((.((((((((((.((((((.((((........(((((((....(((((((.........(((((((.........((((...)))).........))))))).......))))))).)))))))........((((((((..............))))))))..........)))).)))))).)))))))))).))))))))..)))))))))))))))))))))).))))))))

Structure

g        c                      uaugugacaa        a          c      a    ----------------------------------------uccaauua       aaua       aauuaaaua       uuaauuaaa    u 
 uuaaacuc auuaccucccuaacgguaaucc          uucaaaug guuuuaaaug caacuu gaug                                                ggacuag    gguuuuu         aauuuaa         aguu  
 |||||||| ||||||||||||||||||||||          |||||||| |||||||||| |||||| ||||                                                |||||||    |||||||         |||||||         |||| a
 aauuugag uAAUGGAGGGAUUGCUGUUAGG          agguuuau caaaauuuac guugaa uuac                                                ucugauu    ccaaaaa         uuaaguu         ucaa  
-        u                      --------uc        c          a      a    ucuuauaaaaaaagucaguuuuaccuuuucuuuugauuuucuuuuuac       ---a       --gaaaaag       ccacauuaa    a 

Annotation confidence Not enough data

Genome context

chr13: 2497645-2497929 [+]

Mature gra-miR8771b

• Accession: MIMAT0034144
• Description: Gossypium raimondii gra-miR8771b mature miRNA
• Sequence: 255 - GGAUUGUCGUUAGGGAGGUAA - 275
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629