Stem-loop gra-MIR8738a

Accession

MI0027745

Description

Gossypium raimondii gra-MIR8738a precursor miRNA

Sequence

ccugagggucGUUAACUUUAACGGUCAACGGUUaaagaguuuuuuauucaauuuauaauuuuuuaugauuuuuauaaaaaaaauucuaauuuuuaauauuuuuugccacauaucacgccgugguugugacacggggugacuuugauugaaaaaaauuaaggguaguuaacuuuaacaauuaacuguuaaaguuaaugaucaaaaag
......(((((((((((((((((((.((..(((((((..((((((((..((.((((((....)))))).))..))))))))...............................((((.(((((.......))))).))))((((((((......))))))))........)))))))..)).)))))))))))))))))))......

Structure

ccugag                   C  CG       --------------------------------------------------------------------------------------ag        uc  u      u 
      ggucGUUAACUUUAACGGU AA  GUUaaag                                                                                        uuuuuuau  aa uuauaa u
      ||||||||||||||||||| ||  |||||||                                                                                        ||||||||  || ||||||  
      cuaguaauugaaauuguca uu  caauuuc                                                                                        aaaaaaua  uu aguauu u
gaaaaa                   a  aa       aauugaugggaauuaaaaaaaguuaguuucaguggggcacaguguuggugccgcacuauacaccguuuuuuauaauuuuuaaucuuaa        uu  u      u 

Annotation confidence Not enough data

Genome context

chr7: 50017669-50017874 [-]

Mature gra-miR8738a

• Accession: MIMAT0034150
• Description: Gossypium raimondii gra-miR8738a mature miRNA
• Sequence: 11 - GUUAACUUUAACGGUCAACGGUU - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629