miRBase entry: gra-MIR8738b

Stem-loop gra-MIR8738b


Accession
MI0027746
Description
Gossypium raimondii gra-MIR8738b precursor miRNA


Sequence

uuugggggucGUUAACUUUAACGGUCAACGGUUaaaauuaaugguuaaagguccuuuucaugcauuuuauaaauuuuuaaugauuuuuuuauaaaauuuuacaauuuuuuauaauuuuuuaugauuuuuauaaauuuauuuucuaauuuuuaauaaauuuuauauauuuucuauuaaaauuuaauuuuuuauaacuuuuauugauuuuuguuuuuuauaauuuuuuugccacaugucacaccgugguugacacggguggcuuuaauugaaaaaauuaggaguaguuaaauuuaacgguuaauuguuaaaguuaauggucaaaggg
......(((((((((((((((((((.(((.((((((.(((((.........(((..............(((((...(((((((.....((((((((..(((.((((((...........(((((..((((((((((........)))))...)))))..)))))...........)))))))))..))))))))...)))))))..)))))......((((((((((.......(((((.(((((.....)))))))))).......)))))))))))))...))))).)))))).))).)))))))))))))))))))......

Structure
uuuggg                   C   G      a     gguuaaagg   ----------------------------------------------------uuuucaugcauuuu     uuu       uuuuu        uu   c      uuauaauuuuu     uu     ---     uau 
      ggucGUUAACUUUAACGGU AAC GUUaaa uuaau         ucc                                                                  auaaa   uuaauga     uuauaaaa  uua aauuuu           uauga  uuuau   aaauu   u
      ||||||||||||||||||| ||| |||||| |||||         |||                                                                  |||||   |||||||     ||||||||  ||| ||||||           |||||  |||||   |||||    
      cugguaauugaaauuguua uug caauuu aauug         agg                                                                  uguuu   aguuauu     aauauuuu  aau uuaaaa           auauu  aaaua   uuuaa   u
gggaaa                   a   g      a     ------aug   auuaaaaaaguuaauuucggugggcacaguuggugccacacuguacaccguuuuuuuaauauuuuu     -uu       --uuc        uu   -      uuaucuuuuau     uu     auu     ucu 


Annotation confidence Not enough data
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Genome context
chr9: 21307832-21308156 [-]

Database links

Mature gra-miR8738b

Accession MIMAT0034151
Description Gossypium raimondii gra-miR8738b mature miRNA
Sequence 11 - GUUAACUUUAACGGUCAACGGUU - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629