miRBase entry: gra-MIR8771c

Stem-loop gra-MIR8771c


Accession
MI0027749
Description
Gossypium raimondii gra-MIR8771c precursor miRNA
Gene family
MIPF0001892; MIR8771


Sequence

uguuacgaaauaaucagucuaucguuaagcuuuguaaucucacuaacgacaauccuaccaauuaggaugagaauaguuuuuccagucaaaauagaaaaaaaaaaacuaaaaaaaaaagagacgaaugauuuuucuuuuuccaguuuaauguguaauuaauuuaaaauuuucaauuaauuaaaaaauauuaucguuccaguuggacauccaauuuagcauuuaaaacucauuucggcugccacgugagauugccauUAGGGAGGUAACGAAGCUUAACGGcauaguaacc
.(((((...............((((((((((((((.(((((.((((.(.(((((.(((....(((((((((..((((((((....((......)).....))))))))....(((((((((.........)))))))))......((((((.(((((((((.((....)).)))))))))....))))))..(((..((((((....)))))).)))........))))))....)))....))).))))).).)))).))))).))))))))))))))....))))).

Structure
u     gaaauaaucagucua              a     a    c a     c   caau   ----      aauaguuuuuccagucaaaauagaaaaaaaaaaacuaaaaaaaaaagagacgaaugauuuuucuuuuuccaguu      ---g         u  a 
 guuac               ucguuaagcuuugu aucuc cuaa g caauc uac    uag    gaugag                                                                          uaaugu    uaauuaauu aa a
 |||||               |||||||||||||| ||||| |||| | ||||| |||    |||    ||||||                                                                          ||||||    ||||||||| ||  
 caaug               GGCAAUUCGAAGCA UGGAG GAUu c guuag gug    guc    uuacuc                                                                          auuaua    auuaauuaa uu u
c     -----------auac              A     G    a c     a   cacc   ggcu      ---------------------------------------aaaauuuacgauuuaaccuacagguugaccuugcu      aaaa         c  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr13: 54359066-54359354 [+]

Database links

Mature gra-miR8771c

Accession MIMAT0034154
Description Gossypium raimondii gra-miR8771c mature miRNA
Sequence 256 - UAGGGAGGUAACGAAGCUUAACGG - 279
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629