miRBase entry: gra-MIR7484f

Stem-loop gra-MIR7484f


Accession
MI0027752
Description
Gossypium raimondii gra-MIR7484f precursor miRNA
Gene family
MIPF0001667; MIR7484


Sequence

aaaugggcaaauuagucuuuguccguuagaucaaagagcaaagugguucuuuuuguguaaaaauucauucguuuuuauuguuaaaauuuagcgugguugacgaauuaaccaaacaguuacacgugccacauguagcauauucugacuuacaagaaccaguuuuuaauaguagauuggaugaaauuuuuaacauaaggauuaguuagcucuuuUAUCUAACGUGUAGGGACUAAuuugcccauu
.((((((((((((((((((((.(((((((((.(((((((.((.((((((((..(((..((((.((((((((..(((((((((((((.......(((((((....)))))))....((((((.((...)).))))))...((((........)))).....))))))))))))).)))))))).))))..))).)))))))).)).))))))).)))))))).)))))))))))))))))))))

Structure
a                    u -        c       a  g        uu   gu    a        uu             uuuagcgugguugacgaauuaaccaaaca      c  g 
 aaugggcaaauuagucuuug c cguuagau aaagagc aa ugguucuu  ugu  aaaa uucauucg  uuuauuguuaaaa                             guuaca gu  
 |||||||||||||||||||| | |||||||| ||||||| || ||||||||  |||  |||| ||||||||  |||||||||||||                             |||||| || c
 uuacccguuuAAUCAGGGAU G GCAAUCUA uuucucg uu auuaggaa  aca  uuuu aaguaggu  agaugauaauuuu                             cgaugu ca  
-                    - U        U       a  g        -u   au    a        -u             -----ugaccaagaacauucagucuuaua      a  c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr10: 2352557-2352799 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gra-MIR7484f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gra-miR7484f

Accession MIMAT0034157
Description Gossypium raimondii gra-miR7484f mature miRNA
Sequence 213 - UAUCUAACGUGUAGGGACUAA - 233
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629