Stem-loop gra-MIR8742a

Accession

MI0027753

Description

Gossypium raimondii gra-MIR8742a precursor miRNA

Gene family

MIPF0002016; MIR8742

Sequence

aggaauguucacaguccaagaugaauaagauagcuauucaugcuaaaacaguugaggaggaguaaauacacgauguaguacuaaaacagcuaaaacagcUAUCUUAUUCAUCUUGGACUGggaacauucc
.(((((((((.((((((((((((((((((((((((..............(((((......((((..((((...)))).))))....))))).....)))))))))))))))))))))))).)))))))))

Structure

a         a                        auucaugcuaaaac     aggagg    aa    c 
 ggaauguuc caguccaagaugaauaagauagcu              aguug      agua  uaca  
 ||||||||| ||||||||||||||||||||||||              |||||      ||||  |||| g
 ccuuacaag GUCAGGUUCUACUUAUUCUAUcga              ucgac      ucau  augu  
-         g                        ---------caaaa     --aaaa    -g    a 

Annotation confidence Not enough data

Genome context

chr11: 53348537-53348666 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8742a

Mature gra-miR8742a

• Accession: MIMAT0034158
• Description: Gossypium raimondii gra-miR8742a mature miRNA
• Sequence: 100 - UAUCUUAUUCAUCUUGGACUG - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629