Stem-loop gra-MIR8742b

Accession

MI0027754

Description

Gossypium raimondii gra-MIR8742b precursor miRNA

Gene family

MIPF0002016; MIR8742

Sequence

aggaauguucccaguccaagaugaauaagauagcuguuuuagcuguuuuaguacuacaucguguauuuacuccuccucaacuguuuuagcaugaauagcUAUCUUAUUCAUCUUGGACUGugaacauucc
.(((((((((.((((((((((((((((((((((((((((..((((...((((........(((....))).........))))...))))..)))))))))))))))))))))))))))).)))))))))

Structure

a         c                            ua    uuu    -acuacauc   u 
 ggaauguuc caguccaagaugaauaagauagcuguuu  gcug   uagu         gug a
 ||||||||| ||||||||||||||||||||||||||||  ||||   ||||         |||  
 ccuuacaag GUCAGGUUCUACUUAUUCUAUcgauaag  cgau   guca         cau u
-         u                            ua    uuu    acuccuccu   u 

Annotation confidence Not enough data

Genome context

chr11: 53348538-53348667 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8742b

Mature gra-miR8742b

• Accession: MIMAT0034159
• Description: Gossypium raimondii gra-miR8742b mature miRNA
• Sequence: 100 - UAUCUUAUUCAUCUUGGACUG - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629