Stem-loop gra-MIR8743c

Accession

MI0027755

Description

Gossypium raimondii gra-MIR8743c precursor miRNA

Gene family

MIPF0001907; MIR8743

Sequence

gucauccaacUAUGAAAAGUUACAAAAUGGUCAUcuaacuauuaguaaauuucuuuuuuggccacccauuaugaaaaguuauaaaauagucauucgacuauucaauuuuaucuuuucuggucaaccaacuucauuggauguuuuaguguuuucauuuuuauauuagccuggugaccaaaaaagauaaaauugaauaaugauugaucauuuuguaacuuauuaugguugaguaaca
((.((.(((((((((.(((((((((((((((((((..((((((.((((.((((.....(((....)))....))))..))))..))))))........((((((((((((((((((.((((((.(((.((......(((((...((((....))))...)))))))..))))))))).))))))))))))))))))..)).))))))))))))))))).))))))))).)).)).

Structure

-  c  c         A                 -  uaacuauuaguaaauuucuuuuuuggccacccauuaugaaaaguuauaaaauagucauucgac                  c      a   -a  ucauug     uuu    u 
 gu au caacUAUGA AAGUUACAAAAUGGUCA Uc                                                               uauucaauuuuaucuuuu ugguca cca  cu      gaugu   agug u
 || || ||||||||| ||||||||||||||||| ||                                                               |||||||||||||||||| |||||| |||  ||      |||||   ||||  
 ca ug guugguauu uucaauguuuuacuagu ag                                                               auaaguuaaaauagaaaa accagu ggu  ga      uuaua   uuac u
a  a  a         a                 u  -------------------------------------------------------------ua                  a      -   cc  ------     uuu    u 

Annotation confidence Not enough data

Genome context

chr10: 698905-699139 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8743c

Mature gra-miR8743c

• Accession: MIMAT0034160
• Description: Gossypium raimondii gra-miR8743c mature miRNA
• Sequence: 11 - UAUGAAAAGUUACAAAAUGGUCAU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629