miRBase entry: gra-MIR8743a

Stem-loop gra-MIR8743a


Accession
MI0027758
Description
Gossypium raimondii gra-MIR8743a precursor miRNA
Gene family
MIPF0001907; MIR8743


Sequence

aucacucuacUAUGAAAAGUUAUAAAAUGGUCAUccaauuauuuaauuuuaucuuuuggucauccaauugucuugaaauuuuugguguuuucauuuuuacuuuagucagcuaaugaucaaaaagacaaaauuaaauaauuagguaaucauuuuguaauuuuucauuguuggauaaucaaaaaagaaaaaaagaacauaggugaa
.((((.(((..((((((((((((((((((((.(((.((((((((((((((.((((((((((((....(((.((..........((((....))))........)).)))...)))))).)))))).)))))))))))))).))).))))))))))))))))))))((((......((......)).......))))))))))).

Structure
a    u   -----------------------------cU                    C   c              a      -      ccaa   u  ugaaauuuuu    u 
 ucac cua                               AUGAAAAGUUAUAAAAUGGU AUc aauuauuuaauuuu ucuuuu ggucau    uug cu          ggug u
 |||| |||                               |||||||||||||||||||| ||| |||||||||||||| |||||| ||||||    ||| ||          ||||  
 agug gau                               uacuuuuuaauguuuuacua ugg uuaauaaauuaaaa agaaaa cuagua    gac ga          uuac u
a    -   acaagaaaaaaagaaaaaacuaauagguugu                    a   a              c      a      -auc   u  --uuucauuu    u 


Annotation confidence Not enough data
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Genome context
chr4: 2016221-2016424 [-]

Database links

Mature gra-miR8743a

Accession MIMAT0034163
Description Gossypium raimondii gra-miR8743a mature miRNA
Sequence 11 - UAUGAAAAGUUAUAAAAUGGUCAU - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629