Stem-loop gra-MIR8744

Accession

MI0027760

Description

Gossypium raimondii gra-MIR8744 precursor miRNA

Sequence

uucccacuacUCAAAAAAUGGGCAAAGUAGUCAUuuagaucaaauagcaaauucaucuuuucuauuaaaaauuucauccuuuucgcuguuaaaaacuuaucuuuguaagucagccucagauacacauguauuugauuaucugucaguuacgccaguuuuuaacaguaaaaauggaugaaauuuuuaacagaaaauaccaucuugcuuuuugaucuaacauauaaagacuauuuuacucauuuuuugaauagagagaaa
(((.(.(((.((((((((((((.(((((((((..((((((((((.(((((.......((((((.(((((((((((((((((((.(((((((((((((......(((((..(((..((((((((....))))))))....)))....)))))..))))))))))))).)))).))))))))))))))).)))))).......))))).))))))))))........))))))))).)))))))))))).))).).))).

Structure

-   c a   c            C         ------AU          u     auucauc      a               -    c             uaucuu     --gu   --cc        a 
 uuc c cua UCAAAAAAUGGG AAAGUAGUC        uuagaucaaa agcaa       uuuucu uuaaaaauuucaucc uuuu gcuguuaaaaacu      uguaa    cag    ucagauac c
 ||| | ||| |||||||||||| |||||||||        |||||||||| |||||       |||||| ||||||||||||||| |||| |||||||||||||      |||||    |||    ||||||||  
 aag g gau aguuuuuuacuc uuuuaucag        aaucuaguuu ucguu       aaaaga aauuuuuaaaguagg aaaa ugacaauuuuuga      gcauu    guc    aguuuaug a
a   a a   a            a         aaauauac          u     cuaccau      c               u    a             ----cc     gacu   uauu        u 

Annotation confidence Not enough data

Genome context

chr7: 60032403-60032660 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8744

Mature gra-miR8744

• Accession: MIMAT0034165
• Description: Gossypium raimondii gra-miR8744 mature miRNA
• Sequence: 11 - UCAAAAAAUGGGCAAAGUAGUCAU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629