miRBase entry: gra-MIR167c

Stem-loop gra-MIR167c


Accession
MI0027762
Description
Gossypium raimondii gra-MIR167c precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
2 open access papers mention gra-MIR167c
(11 sentences)

Sequence

ugcuccaucaUCAGAUGAAGCUGCCAGCAUGAucuuaauuucccucuguuuuaucgaggaaaaaucagaucauguggcaguuucaccuguugcugcuugcac
(((..((.((.(((.(((((((((((.((((((((...(((.((((.........)))).)))...))))))))))))))))))).))).)).))...))).

Structure
-   -uc  u  U   A           G        uaa   c    ugu 
 ugc   ca ca CAG UGAAGCUGCCA CAUGAucu   uuu ccuc   u
 |||   || || ||| ||||||||||| ||||||||   ||| ||||   u
 acg   gu gu guc acuuugacggu guacuaga   aaa ggag   u
c   uuc  c  u   c           -        cua   a    cua 


Annotation confidence Not enough data
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Genome context
chr6: 48890368-48890469 [+]

Database links

Mature gra-miR167c

Accession MIMAT0034167
Description Gossypium raimondii gra-miR167c mature miRNA
Sequence 11 - UCAGAUGAAGCUGCCAGCAUGA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629