miRBase entry: gra-MIR8749

Stem-loop gra-MIR8749


Accession
MI0027770
Description
Gossypium raimondii gra-MIR8749 precursor miRNA


Sequence

gggagggugaUCUCGGACCCUCAACGGAAGGuauuguucuugugucgagauuuugucucucguauuccauggagagcccaaaggguucccggaauuuaagaagcaccuugacuaauggagauaugacuuguaagcucaugggagaaaugucaauauugugcaaaauauuaauuaugcauauugcgcuugcgggaguucaaaccaccaaccaaggcuuaaaggccuuaccuuuacauccacaaaauacaagagagacaaaaucccaacacaugaacgauacuuuucguugggguuugagaccgacauuccuu
(((((.(((.((((((((((.((((((((((((((((((.(((((.(.((((((((((((((((((...((((((((((...))))))(((....(((((......)))))....))).(((((..(((.((......)).)))..))))).....((((((.(((....))).))))))..((.((((.((..((....))..))...)))))).((((((.....))))))..))))...)))))..))))))))))))).).))))).)))))))))))))))))))))))))))).).)).))))).

Structure
-     g  - a          U                  u     c a             --     cca    --------------------------------------gagcccaaaggguucccggaauuuaagaagcaccuugacuaaugga     ga   g  ag 
 gggag gu g UCUCGGACCC CAACGGAAGGuauuguuc ugugu g gauuuugucucuc  guauu   ugga                                                                                    gauau  cuu ua  c
 ||||| || | |||||||||| |||||||||||||||||| ||||| | |||||||||||||  |||||   ||||                                                                                    |||||  ||| ||   
 uccuu ca c agaguuuggg guugcuuuucauagcaag acaca c cuaaaacagagag  cauaa   accu                                                                                    cugua  gag gu  u
u     a  g c          -                  u     a c             aa     aac    acauuuccauuccggaaauucggaaccaaccaccaaacuugagggcguucgcguuauacguauuaauuauaaaacguguuauaa     aa   g  ac 


Annotation confidence Not enough data
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Genome context
chr11: 60620749-60621059 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from gra-MIR8749
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gra-miR8749

Accession MIMAT0034175
Description Gossypium raimondii gra-miR8749 mature miRNA
Sequence 11 - UCUCGGACCCUCAACGGAAGG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629