miRBase entry: gra-MIR8754

Stem-loop gra-MIR8754


Accession
MI0027778
Description
Gossypium raimondii gra-MIR8754 precursor miRNA


Sequence

gccucgucggUGCCGCCUGACACACUGACGACACuacccauuuuucuccccaaucauucugucaucauuaccaguauguauuuuuuaaagauaccugaaaaauacggguauaccaauuuuuaaaaaaaaagaagaaaaauauauauuuucuaaugguguugucgccgugccaagcggcaccucuauuuaccuggcg
(((..((.((((((((.((.(((..(((((((((((..................(((.(((..........))).)))..(((((((((((((((((.......))))))......))))))))))).....((((((.......))))))..)))))))))))..))).)).)))))))).......))..))).

Structure
-   uc  ------c        C  A   AC           cccauuuuucuccccaaucauucugucaucauuaccaguaugua           ------      aa 
 gcc  gu       ggUGCCGC UG CAC  UGACGACACua                                            uuuuuuaaaga      uaccug  a
 |||  ||       |||||||| || |||  |||||||||||                                            |||||||||||      ||||||  a
 cgg  ca       ccacggcg ac gug  gcuguuguggu                                            aaaaaauuuuu      augggc  a
g   uc  uuuaucu        a  c   cc           ------------------aaucuuuuauauauaaaaagaagaaa           aaccau      au 


Annotation confidence Not enough data
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Genome context
chr9: 23129834-23130029 [+]

Database links

Mature gra-miR8754

Accession MIMAT0034183
Description Gossypium raimondii gra-miR8754 mature miRNA
Sequence 11 - UGCCGCCUGACACACUGACGACAC - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629