miRBase entry: gra-MIR8674b

Stem-loop gra-MIR8674b


Accession
MI0027792
Description
Gossypium raimondii gra-MIR8674b precursor miRNA
Gene family
MIPF0001929; MIR8674


Sequence

aucuuuccuaucacauuauccauggucucuuuccaaguauuuaaugacauaucugaauuuuuuuccaugccauuaacacauaauuuugguaaguuguuccuucagcccuaaaucuagaaccuugaaccccaaaucugaacaccgaauccaaaccuugaaccucgaauuuuaaacccuaaacucaaacccaaacccuaaauccuaaaacuuaaguucaagguuuaggguucaaauuuggggcucaagguuuagguucgagguugaagguuugggcuuaggguuuaagguuuaggguuuuggguucaagguuuaagauucaagauuuaagauucagaguuggggguucuagguuuaagguucaagguaaaagaaaauuauaaaaauuaugugucaaugacauaaaaaaauuguuaaaaugucauuaaauaaUUAGAAAUGGACCAUGGAUGAUGUggggguaaga
.((((.(((.((((((((((((((((((.((((.((.(((((((((((((.....(((((((((..(((.((((.((((((((((((.((((.((.((((((.((((.(((((((((((((((.((((((((((((((((.((...((((((((((.((((((((((((.(((((.....((((((....(((((((((.(((..(((....)))..))))))))))))....))))))......))))))))))))))))).))))))))))....)))))).)))))).))).((((((((..((((((........))))))..))))))))))).))))))))))))))).)))).))))...)).))..)))).)))))))))))).)))).))))))))))))......))))))))))))).)).)))).))))))))))))))))))))).))))

Structure
a    u   a                  c    c  g             -aucug         cc   c    a            g    -g  g  ---    c    c               g   -----------------------------------------   -      -    a  -gaa          g            u     -cuaaa      ccca         u   aa   u 
 ucuu ccu ucacauuauccauggucu uuuc aa uauuuaaugacau      aauuuuuuu  aug cauu acacauaauuuu guaa  uu uu   ccuu agcc uaaaucuagaaccuu aac                                         ccc aaaucu gaac cc    uccaaaccuu aaccucgaauuu aaacc      cucaaa    aacccuaaa ccu  aac u
 |||| ||| |||||||||||||||||| |||| || |||||||||||||      |||||||||  ||| |||| |||||||||||| ||||  || ||   |||| |||| ||||||||||||||| |||                                         ||| |||||| |||| ||    |||||||||| |||||||||||| |||||      ||||||    ||||||||| |||  |||  
 agaa ggg ggUGUAGUAGGUACCAGG AAAG UU auaaauuacugua      uuaaaaaaa  uac guaa uguguauuaaaa uauu  aa aa   ggaa uugg auuuggaucuugggg uug                                         ggg uuugga uuug gg    ggguuuggaa uuggagcuugga uuugg      ggguuu    uugggauuu gga  uug a
-    u   -                  U    A  a             aaauug         --   a    c            a    aa  g  aau    c    a               g   agacuuagaauuuagaacuuagaauuuggaacuuggguuuu   a      a    -  auuc          g            -     aacucg      aaac         -   ac   a 


Annotation confidence Not enough data
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Genome context
chr8: 8534158-8534620 [+]

Database links

Mature gra-miR8674b

Accession MIMAT0034197
Description Gossypium raimondii gra-miR8674b mature miRNA
Sequence 430 - UUAGAAAUGGACCAUGGAUGAUGU - 453
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629