miRBase entry: gra-MIR8765

Stem-loop gra-MIR8765


Accession
MI0027794
Description
Gossypium raimondii gra-MIR8765 precursor miRNA


Sequence

auauggggcacuucuaacaugagcuucacugaaaaaagcuuaugaaaagcuuuuaccaaaauaucuaacgauauugguaaauccuuagaaauauugguaaagccaauauugguaaaucguuagaaauauuaguaaaagcuuuuucuaagccauuuUUAGUGGAGCUCAUGCUAGAAuuucccauga
.(((((((...(((((.((((((((((((((((((..(((((.(((((((((((((.((.((.(((((((((...((.....))(((..(((((((((...)))))))))..)))))))))))).)).)).))))))))))))).)))))..)))))))))))))))))).)))))..))))))).

Structure
a       cac     a                  aa     u             c  a  a         auugguaaaucc   ga         a 
 uaugggg   uucua caugagcuucacugaaaa  gcuua gaaaagcuuuuac aa au ucuaacgau            uua  aauauuggu  
 |||||||   ||||| ||||||||||||||||||  ||||| ||||||||||||| || || |||||||||            |||  ||||||||| a
 guacccu   AAGAU GUACUCGAGGUGAUUuuu  cgaau uuuuucgaaaaug uu ua agauugcua            aau  uuauaaccg  
a       -uu     C                  ac     c             a  a  a         ------------   gg         a 


Annotation confidence Not enough data
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Genome context
chr2: 14450236-14450421 [-]

Database links

Mature gra-miR8765

Accession MIMAT0034199
Description Gossypium raimondii gra-miR8765 mature miRNA
Sequence 156 - UUAGUGGAGCUCAUGCUAGAA - 176
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629