miRBase entry: gra-MIR8767b

Stem-loop gra-MIR8767b


Accession
MI0027798
Description
Gossypium raimondii gra-MIR8767b precursor miRNA
Gene family
MIPF0001948; MIR8767


Sequence

ccucucauuuUUCAACUCUGCCAAGCAAUUGgugaaaagaaaauuuagaaauauggaacauugaagaagcagaaaaauagaaagaaaaaaauacauuuuccauuaaugugcuugauaagaaagaugggaaaauugaaaaagaaguaauuuucuuuucaucaauugcuuggcagaguugaaaaaugagagga
(((((((((((((((((((((((((((((((((((((((((((((................((......))........................(((((((((..(.(........).)..)))))))))..............))))))))))))))))))))))))))))))))))))))))))))).

Structure
-                                             uagaaauauggaacauugaagaagcagaaaaauagaaagaaaaaaauaca         aa g gcu 
 ccucucauuuUUCAACUCUGCCAAGCAAUUGgugaaaagaaaauu                                                  uuuuccauu  u u   u
 |||||||||||||||||||||||||||||||||||||||||||||                                                  |||||||||  | |    
 ggagaguaaaaaguugagacgguucguuaacuacuuuucuuuuaa                                                  aaaggguag  a a   g
a                                             ------------------------------------ugaagaaaaaguua         aa g aua 


Annotation confidence Not enough data
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Genome context
chr8: 50828268-50828458 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gra-MIR8767b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gra-miR8767b

Accession MIMAT0034203
Description Gossypium raimondii gra-miR8767b mature miRNA
Sequence 11 - UUCAACUCUGCCAAGCAAUUG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629