Stem-loop gra-MIR7484g

Accession

MI0027801

Description

Gossypium raimondii gra-MIR7484g precursor miRNA

Gene family

MIPF0001667; MIR7484

Sequence

agcaaacuagUUCUUAUAUGUUAGAUCAAAGAGCauacugcuccuauuaaaaaugauauccauuucuacguuaaaaaucgggcuuuuaugucagcguggaauuuuaacaauagaaauggaggaaaccuuuaacagaaaugaccgguuugcucuuuaaucuaacuauagggacuaauuugacua
((((((.(((((((((((.(((((((.((((((((.((((.((((.(((((.......((((((((((.(((((((.(((.(((........))).)))..)))))))..)))))))))).......))))).))....)).)))).)))))))).)))))))))))))))))).)))).)).

Structure

-  -    c           U       C        u    c  ----  a     aaugaua          -c       -a   g   uuu 
 ag caaa uagUUCUUAUA GUUAGAU AAAGAGCa acug uc    cu uuaaa       uccauuucua  guuaaaa  ucg gcu   a
 || |||| ||||||||||| ||||||| |||||||| |||| ||    || |||||       ||||||||||  |||||||  ||| |||    
 uc guuu aucagggauau caaucua uuucucgu uggc ag    ga aauuu       agguaaagau  caauuuu  ggu cga   u
a  a    a           -       a        u    c  uaaa  c     ccaaagg          aa       aa   g   cug 

Annotation confidence Not enough data

Genome context

chr1: 9134356-9134538 [-]

Mature gra-miR7484g

• Accession: MIMAT0034206
• Description: Gossypium raimondii gra-miR7484g mature miRNA
• Sequence: 11 - UUCUUAUAUGUUAGAUCAAAGAGC - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629