miRBase entry: gra-MIR8771f

Stem-loop gra-MIR8771f


Accession
MI0027804
Description
Gossypium raimondii gra-MIR8771f precursor miRNA
Gene family
MIPF0001892; MIR8771


Sequence

caaaugaguuuuaaaugccuacuugaaugucaaauugggacgagaauaaguuuuuaauuaaauaauuuuaauuaauugaaaauuuuaaauuaauuacaccuugaacuagaaaagaaaaccauuugucuccuuuuucuuuuaguuuucuuuuccauuuugauugaaaaaauuauuuucauccuagUUGGACAUCCAAGUUAGCAUUUAuaacucauuu
.(((((((((.(((((((..(((((.(((((.((((((((.((((((((.((((((((((((......(((((((((..........)))))))))............(((((((((((......................)))))))))))...))))))))))))..)))))))).)))))))).))))).)))))..))))))).)))))))))

Structure
c         u       cu     a     a        c        -g            uaauuuuaauuaauugaaaauuuuaaauuaauuacaccuugaacua           cauuugucuc 
 aaaugaguu uaaaugc  acuug auguc aauuggga gagaauaa  uuuuuaauuaaa                                              gaaaagaaaac          c
 ||||||||| |||||||  ||||| ||||| |||||||| ||||||||  ||||||||||||                                              |||||||||||           
 uuuacucaa AUUUACG  UGAAC UACAG UUgauccu cuuuuauu  aaaaguuaguuu                                              cuuuucuuuug          u
-         u       AU     C     G        a        aa            -------------------------------------------uac           auuuucuuuu 


Annotation confidence Not enough data
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Genome context
chr4: 7480874-7481090 [-]

Database links

Mature gra-miR8771f

Accession MIMAT0034209
Description Gossypium raimondii gra-miR8771f mature miRNA
Sequence 185 - UUGGACAUCCAAGUUAGCAUUUA - 207
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629