miRBase entry: gra-MIR8762d

Stem-loop gra-MIR8762d


Accession
MI0027809
Description
Gossypium raimondii gra-MIR8762d precursor miRNA
Gene family
MIPF0001859; MIR8762


Sequence

aaguuaagaaUUGUUAACUUUGAUGAUGUGGCAUauauguggauuuccauguggcaauuaauugauuuuuuacaauuuuaaaaaauuguaaaaauucuuucuaaaaaauaaaaaaaauaguuaaaagauuaucaaagauauaauuuuuuuaauauuuuaaaguuuuuaaaaaauaacuaauugcuaaugcgacaagccacgugugugucaugucagcaaaguuaacaaaaauuaacuuc
(((((((...((((((((((((.(((((((((((((((((((...(((((.(((((((((...((.((((((((((((....)))))))))))).))......((((((....((((((...((((((((((.......))))))))))...))))))...))))))..........)))))))))))).))....))))))))))))))))))).))))))))))))...))))))).

Structure
-       gaa            A                   -auu  -   g         auugauuuuuuacaauuuuaaaaaauuguaaaaauucuuucua      aaaa      guu          ca 
 aaguuaa   UUGUUAACUUUG UGAUGUGGCAUauaugugg    uc cau uggcaauua                                           aaaaau    aaaaua   aaaagauuau  a
 |||||||   |||||||||||| |||||||||||||||||||    || ||| |||||||||                                           ||||||    ||||||   ||||||||||  a
 uucaauu   aacaauugaaac acuguacugugugugcacc    ag gua aucguuaau                                           uuuuug    uuuuau   uuuuuuaaua  g
c       aaa            g                   gaac  c   -         ---------------------------------caauaaaaaa      -aaa      aau          ua 


Annotation confidence Not enough data
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Genome context
chr8: 53253449-53253687 [-]

Database links

Mature gra-miR8762d

Accession MIMAT0034214
Description Gossypium raimondii gra-miR8762d mature miRNA
Sequence 11 - UUGUUAACUUUGAUGAUGUGGCAU - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629