Stem-loop gra-MIR7484j

Accession

MI0027812

Description

Gossypium raimondii gra-MIR7484j precursor miRNA

Gene family

MIPF0001667; MIR7484

Sequence

gaauuauucuuuauauguuagauuaaaaaguaaauuaguucuucuguuaaaaguuuuaucuauuuuuacuacuaaaaacuaauccacguaugucagaaugagguaaauguggcaugucauguguaacuauuugguuguucuauuguccugccaauuuuaacaguaaaaauggaugaaauuuuuaacaaaaaggacuggUUUACUCUUUGAUCUAACGUACAaauacuaauu
.(((((...(((.((((((((((((((.(((((((((((((((.((((((((((((((((((((((((((..(((((.......(((((((((((.(.(......).).))))))...))))).......(((((.(..(....)..).))))))))))..))))))))))))))))))))))))))..))))))))))))))).)))))))))))))).)))...)))))

Structure

g     uuc   a              a               -c                          ac     ------------------------acuaauc     ---      g a ga 
 aauua   uuu uauguuagauuaaa aguaaauuaguucuu  uguuaaaaguuuuaucuauuuuuacu  uaaaa                               cacgu   auguca a u  g
 |||||   ||| |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||  |||||                               |||||   |||||| | |   
 uuaau   aaA AUGCAAUCUAGUUU UCAUUUggucaggaa  acaauuuuuaaaguagguaaaaauga  auuuu                               gugua   uacggu u a  g
-     cau   C              C               aa                          ca     aaccguccuguuaucuuguugguuuaucaau     cug      g a au 

Annotation confidence Not enough data

Genome context

chr1: 9278760-9278990 [+]

Mature gra-miR7484j

• Accession: MIMAT0034217
• Description: Gossypium raimondii gra-miR7484j mature miRNA
• Sequence: 199 - UUUACUCUUUGAUCUAACGUACA - 221
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629