Stem-loop gra-MIR7484k

Accession

MI0027813

Description

Gossypium raimondii gra-MIR7484k precursor miRNA

Gene family

MIPF0001667; MIR7484

Sequence

caaauuagucUUUAUACAUUAGAUCAAAGAGCAAauuaauccuguuaaaaauucuauccauguauacgguuaaaaacagguuacuauaucucagcaugaguacacggaacauaccacaugucauuauaugauuauucugucagccauuucaguuucuaacaguacaaaaggaugaaauuuuuaacagaaaugaucaauuugcucuuuagucuagcauauagggaucaauuugu
((((((.(((((((((..((((((.((((((((((((.(((((((((((((((.(((((.(((((...((((.((((((((......))))....(((.((..((((((.......(((((....)))))....))))))..)))))....)))).)))).)))))...))))).))))))))))))....))).)))))))))))).))))))..))))))))).)))))).

Structure

-      a         CA      C            a   ----            c     --a     acg    a    agguuacuauaucucagc   a  ac      cauacca     c 
 caaauu gucUUUAUA  UUAGAU AAAGAGCAAauu auc    cuguuaaaaauu uaucc   uguau   guua aaac                  aug gu  acggaa       caugu a
 |||||| |||||||||  |||||| |||||||||||| |||    |||||||||||| |||||   |||||   |||| ||||                  ||| ||  ||||||       |||||  
 guuuaa uagggauau  gaucug uuucucguuuaa uag    gacaauuuuuaa guagg   acaug   caau uuug                  uac cg  ugucuu       guaua u
u      c         ac      a            c   uaaa            a     aaa     --a    c    --------------acuu   -  ac      ---auua     u 

Annotation confidence Not enough data

Genome context

chr4: 721204-721436 [+]

Mature gra-miR7484k

• Accession: MIMAT0034218
• Description: Gossypium raimondii gra-miR7484k mature miRNA
• Sequence: 11 - UUUAUACAUUAGAUCAAAGAGCAA - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629