Stem-loop gra-MIR8776c

Accession

MI0027816

Description

Gossypium raimondii gra-MIR8776c precursor miRNA

Gene family

MIPF0001899; MIR8775

Sequence

aacuaccggggagcaaauaguaugcaagaacuuucaaauuuuuccucugcucacacaagauccaugcccacuagcacgguuuauauaauucgaacuacguggucccauuaauaacuaaagaccgaccaauuauuuggaaaacggaaugcuugaagccauugugaagaaaaaUUUCAAAGUCCUUGCAUACUAUUUucccaccagu
.(((....((((..((((((((((((((.(((((.(((((((((......(((((((((.(((....(((((((..(((..........)))..))).)))).......................((((....)))).....)))...)))).......))))).))))))))).))))).))))))))))))))))))...)))

Structure

a   accg    gc              a     c         cucugc     -------    --a   ------------------------------------augc    -   ca   uuua 
 acu    ggga  aaauaguaugcaag acuuu aaauuuuuc      ucaca       caag   ucc                                        ccac uag  cgg    u
 |||    ||||  |||||||||||||| ||||| |||||||||      |||||       ||||   |||                                        |||| |||  |||     
 uga    cccu  UUUAUCAUACGUUC UGAAA UUUaaaaag      agugu       guuc   agg                                        ggug auc  gcu    a
-   -cca    --              C     C         -----a     uaccgaa    gua   caaaagguuuauuaaccagccagaaaucaauaauuacccu    c   aa   uaau 

Annotation confidence Not enough data

Genome context

chr13: 51867510-51867714 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gra-MIR8776c

Mature gra-miR8776c

• Accession: MIMAT0034221
• Description: Gossypium raimondii gra-miR8776c mature miRNA
• Sequence: 172 - UUUCAAAGUCCUUGCAUACUAUUU - 195
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629