miRBase entry: gra-MIR7484l

Stem-loop gra-MIR7484l


Accession
MI0027824
Description
Gossypium raimondii gra-MIR7484l precursor miRNA
Gene family
MIPF0001667; MIR7484


Sequence

aaugggcaaauuaguuccuguauguuagauuaaagaguaaacuacauucuguuaaaauuuuuauccauuucuacaauuuguuaaaaacuagcauggcuaauggaauaaccggauaguuauacguggcguacuacuugcaccucaugcuaacguauagggaccaaauuuuaacaguaaaaguggauggaauuuuuaauaaaaggacgaguuugcucUUUGAUCUAAUGUAUGGAGACUAguuugccuau
.(((((((((((((((.((((((((((((((((((((((((((.(.(((((((((((.((((((((((((.(((....((((((((......(((((((.(((.....)))..)))))))..((((....))))(((..(((.((((....)))).)))..))).))))))))))).)))))))))))).)))))))...)))).))))))))))))))))))))))))))).)))))))))))))))

Structure
a               c                          a a    ---       u            c   aauu        ---------------------------------------acuagc       -a   a 
 augggcaaauuaguu cuguauguuagauuaaagaguaaacu c uucu   guuaaaa uuuuauccauuu uac    uguuaaaa                                             auggcua  ugg a
 ||||||||||||||| |||||||||||||||||||||||||| | ||||   ||||||| |||||||||||| |||    ||||||||                                             |||||||  ||| u
 uauccguuugAUCAG GGUAUGUAAUCUAGUUUcucguuuga g agga   uaauuuu aagguaggugaa aug    acaauuuu                                             uauugau  gcc a
-               A                          - c    aaa       u            a   ----        aaaccagggauaugcaaucguacuccacguucaucaugcggugca       ag   a 


Annotation confidence Not enough data
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Genome context
chr2: 60358247-60358494 [+]

Database links

Mature gra-miR7484l

Accession MIMAT0034229
Description Gossypium raimondii gra-miR7484l mature miRNA
Sequence 216 - UUUGAUCUAAUGUAUGGAGACUA - 238
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629