miRBase entry: gra-MIR8743b

Stem-loop gra-MIR8743b


Accession
MI0027826
Description
Gossypium raimondii gra-MIR8743b precursor miRNA
Gene family
MIPF0001907; MIR8743


Sequence

gccacucaacUUUGGAAAGUUAUAAAAUGGUCAUcuaauuauuuuaauuuugucuuuuucggucaucaguuaguuaauguaaaaauggaagcacccaaaaauucaagauaguugagugaccaaaaaagacaaaauuaaauuguugagugaucauuuuguauuuuucauaguugggugaauaaaaaaaagaaauuuacuaguugagugaccauuuuguaacuuuucauaguugagcgac
..(.(((((((.((((((((((((((((((((((.(((((..(((((((((((((((((.((((((((((((.....((......(((......)))......))...))))))).))))).)))))))))))))))))......(((((...((((......(((((......))))).......))))...)))))))))).)))))))))))))))))))))).))))))).)..

Structure
gc a       U                      c     ---------------------------------------------------------au                 c     -       guuaa  uaaaaa   aa 
  c cucaacU UGGAAAGUUAUAAAAUGGUCAU uaauu                                                           uuuaauuuugucuuuuu gguca ucaguua     ug      ugg  g
  | ||||||| |||||||||||||||||||||| |||||                                                           ||||||||||||||||| ||||| |||||||     ||      |||   
  g gaguuga acuuuucaauguuuuaccagug guuga                                                           aaauuaaaacagaaaaa ccagu aguugau     ac      acc  c
ca c       u                      a     ucauuuaaagaaaaaaaauaaguggguugauacuuuuuauguuuuacuagugaguuguu                 a     g       --aga  uuaaaa   ca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr8: 54761476-54761713 [+]

Database links

Mature gra-miR8743b

Accession MIMAT0034231
Description Gossypium raimondii gra-miR8743b mature miRNA
Sequence 11 - UUUGGAAAGUUAUAAAAUGGUCAU - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629