miRBase entry: gra-MIR7484m

Stem-loop gra-MIR7484m


Accession
MI0027829
Description
Gossypium raimondii gra-MIR7484m precursor miRNA
Gene family
MIPF0001667; MIR7484


Sequence

uaaauuagccUUUGUAUGUUAGAUCGAAGAGcaaauuggcccuuuuauuguaaauuucauccauuucuacuguuaaaaacuaaucccuguaugucgacaugaggaauauguggcacgccaugucugguuauuccaucagcaucgcuaguuuaauaauuagaauagaugaaaauuuuaacuaaaaggacuacuuugcucuuugauuuaacuuauaaggacuaauuugc
((((((((.(((((((.((((((((((((((((((.(((.((((((((((.((.(((((((...(((((.((((((..((((.........((((.(((((.....))))))))).((.(((.(((((......)))))))).))))))))))))..)))))..))))))).)).))).))))))).))).)))))))))))))))))).))))))).)))))))).

Structure
-        c       U                  u   c       -   u  a       cau     -c      aa    aucccuguaugucgacaugaggaauauguggcac  c   u     ua 
 uaaauuag cUUUGUA GUUAGAUCGAAGAGcaaa ugg ccuuuua uug aa uuucauc   uucua  uguuaa  acua                                  gc aug cuggu  u
 |||||||| ||||||| |||||||||||||||||| ||| ||||||| ||| || |||||||   |||||  ||||||  ||||                                  || ||| |||||   
 guuuaauc ggaauau caauuuaguuucucguuu auc ggaaaau aau uu aaaguag   aagau  auaauu  ugau                                  cg uac gacua  u
c        a       u                  c   a       c   u  a       -au     ua      --    ----------------------------------  c   -     cc 


Annotation confidence Not enough data
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Genome context
chr13: 976428-976654 [-]

Database links

Mature gra-miR7484m

Accession MIMAT0034234
Description Gossypium raimondii gra-miR7484m mature miRNA
Sequence 11 - UUUGUAUGUUAGAUCGAAGAG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629